PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05997.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 160aa    MW: 17179.3 Da    PI: 9.1223
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05997.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.4e-212372255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++ a+++++g
  Rsa1.0_05997.1_g00004.1 23 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDSAAREFRG 72
                             7********.**********8...557************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-332380IPR001471AP2/ERF domain
CDDcd000189.76E-332380No hitNo description
PfamPF008478.8E-152372IPR001471AP2/ERF domain
PROSITE profilePS5103224.2892380IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-232382IPR016177DNA-binding domain
SMARTSM003802.9E-392386IPR001471AP2/ERF domain
PRINTSPR003676.3E-122435IPR001471AP2/ERF domain
PRINTSPR003676.3E-124662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSPRPENAGH AGVSGVGKIK EVHYRGVRKR PWGRYAAEIR DPGKKTRVWL GTFDTAEEAA  60
RAYDSAAREF RGSKATTNFP FSGGDGGGNA LGTHVTAREG VCGNNAVNGF FLDLPHATAS  120
REELVRGLPV RFEPIEMGLS IGHKTTDLNL DLSLAPSMDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-232386569ATERF1
3gcc_A6e-232386569ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013719213.17e-93PREDICTED: ethylene-responsive transcription factor 9-like
SwissprotQ9FE672e-54ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A078DKU52e-93A0A078DKU5_BRANA; BnaA10g02160D protein
STRINGBra015266.1-P3e-90(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-44erf domain protein 9